AnanseSeurat: Construct ANANSE GRN-Analysis Seurat

Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.

Version: 1.2.0
Depends: R (≥ 3.50)
Imports: dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr, rlang, Seurat, stringr, utils
Suggests: covr, knitr, rmarkdown, Signac, testthat (≥ 3.0.0)
Published: 2023-11-11
DOI: 10.32614/CRAN.package.AnanseSeurat
Author: Jos Smits ORCID iD [aut, cre, cph], Huiqing Jo Zhou ORCID iD [aut, fnd, cph]
Maintainer: Jos Smits <Jsmits at science.ru.nl>
BugReports: https://github.com/JGASmits/AnanseSeurat/issues
License: Apache License (≥ 2)
URL: https://github.com/JGASmits/AnanseSeurat/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: AnanseSeurat results

Documentation:

Reference manual: AnanseSeurat.pdf
Vignettes: introduction

Downloads:

Package source: AnanseSeurat_1.2.0.tar.gz
Windows binaries: r-devel: AnanseSeurat_1.2.0.zip, r-release: AnanseSeurat_1.2.0.zip, r-oldrel: AnanseSeurat_1.2.0.zip
macOS binaries: r-release (arm64): AnanseSeurat_1.2.0.tgz, r-oldrel (arm64): AnanseSeurat_1.2.0.tgz, r-release (x86_64): AnanseSeurat_1.2.0.tgz, r-oldrel (x86_64): AnanseSeurat_1.2.0.tgz
Old sources: AnanseSeurat archive

Linking:

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