Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
| Version: | 2.8 |
| Depends: | ape, nloptr, GenSA |
| Imports: | expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2022-06-13 |
| DOI: | 10.32614/CRAN.package.corHMM |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut] |
| Maintainer: | Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | corHMM results |
| Reference manual: | corHMM.pdf |
| Vignettes: |
Generalized corHMM |
| Package source: | corHMM_2.8.tar.gz |
| Windows binaries: | r-devel: corHMM_2.8.zip, r-release: corHMM_2.8.zip, r-oldrel: corHMM_2.8.zip |
| macOS binaries: | r-devel (arm64): corHMM_2.8.tgz, r-release (arm64): corHMM_2.8.tgz, r-oldrel (arm64): corHMM_2.8.tgz, r-devel (x86_64): corHMM_2.8.tgz, r-release (x86_64): corHMM_2.8.tgz, r-oldrel (x86_64): corHMM_2.8.tgz |
| Old sources: | corHMM archive |
| Reverse imports: | hisse |
| Reverse suggests: | DAISIEprep |
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