lik_profile() based on
the routines described by Tjalling Jager (doi: 10.1002/ieam.4333) and
implemented in BYOMsurvival() has been deprecated. Survival
probabilities of affected models are now part of the return value of
simulate().DEB_Daphnia() has been superseded by the
more appropriatly named DEBtox(). The former function is
still available, but will show a warning when used.DEBtox() model equations have been updated to
conform with BYOM’s DEBtox 2019 module version
4.7.param.bounds was added to effect scenario
classes to store valid parameter ranges of commonly fitted model
parameters. The information is currently only used in likelihood
profiling.set_bounds() to set or modify parameter
bounds for one or more scenarios or calibration sets.calibrate() must
accept four arguments; the error function will be supplied with all
observed and predicted values in one call. The two additional parameters
represent optional weights and study IDs.calibrate()tag was added to calibration set
classes to store additional metadata such as study IDs. The information
will be passed on to the error function by
calibrate().caliset(). The former CalibrationSet() is
still available, but will show a warning when used.morse removed (temporarily) as suggested package,
because it was archived by CRANplot_scenario()calibrate()
Algae_TKTD() harmonized with
Algae_Simple() model equationsInitial public release