LOG of the CHANGES in the package hoardeR

Version 0.10:
* Aliases in package description adjusted

Version 0.9.4-4:
* targetScan takes now vectors as input to mirna

Version 0.9.4-2:
* Fixed a file mismatch in vignette

Version 0.9.4:
* Cran release

Version 0.9.3:
* Added the function 'getSequenceFromNCBI()'
* Added the function 'coverageDensity()'
* import* function deprecated and placed into GenomicTools.fileHandler package

Version 0.9.2:
* Windows support for file handling improved

Version 0.9.1:
* Typos in manual fixed
* Typos in vignette fixed
* Minor bugfixes in 'blastSeq'
* Added the function 'importBed()'
* output of 'print.fa()' adjusted
* Bugfix in 'getFastaFromBed()'
    - 'version' option wasn't used properly
* Improvement in 'exportBed'
    - If file=NULL (default) the variable name is used as file name
* Improvement in 'exportFA'
    - If file=NULL (default) the variable name is used as file name
* Improvements in 'getAnnotation()'
    - Better guessing of right URL at Ensembl
* Improvements in 'getFastaFromBed()'
    - fasta files are now imported using the 'Rsamtools::scanFa' function
* Improvements in 'plotHit()'
    - Better guessing of right URL at Ensembl
    - Bam files that are used in groups are now displayed for better control
* Improvements in 'summary.fa()'
    - Output is now better aligned
* All connections to NCBI use now 'https' instead of 'http'

Version 0.9:
* Major update for functionality and usability
* Added the authors@R filed to the Description
* Added the log option to blastSeq. This way a crashed blast run and continue where it crashed.
* Added the nrow option for the 'importGTF' function
* Added the 'print.pedMap' function
* Added the 'summary.pedMap' function
* Added the 'targetScan' function
* Added the functions 'subGprobs', 'subPhased' and 'subDose'
* Bugfixed the blastSeq function
* Bugfixed the importXML function
* The 'summary.fa' function is now more informative
* Added the 'plotHit' function
* Added the 'intersectXMLAnnot' function
* Added several small helper functions
* Added the 'getfastaFromBed' function
* Added the 'exportFA' function
* Added the 'exportBed' function
* Deprecated the 'importPedMap' function
* Added the package Vignette

Version 0.1:
* Added the data example.fa
* importFA returns now an object of class 'fa' instead of 'character'
* Added the function 'print.fa'
* Added the function 'summary.fa'

Version 0.0-2:
* Included the function 'getEnsgInfo'
* Included the function 'getGeneSeq'
* Updated the manual pages
* Improved the input checks in the 'blastSeq' function
* Included the function 'print.blastRes'
* Included the function 'summary.blastRes'
* Included the function 'importGFF3'
* Added hoardeR to a Git-hub repository

Version 0.0-1:
* First build with basic functionality