mappeR 1.3.0
- Adjust
compute_tightness to no longer normalize by the
maximum distance from the medoid (easier to see behavior in a single
mapper graph, may add options in future)
- Add option to consider each level set locally when clustering;
default is still to do it globally
mappeR 1.2.0
- Add other hierarchical clustering methods (those available from
fastcluster)
- Fix issues with 100 percent overlap situations caused by
mapply simplifications
mappeR 1.1.0
- Added safety checks for mapper input functions (no
NA
inputs, etc)
- Removed Cytoscape interfacing for the release version; will remain
in a separate branch
mappeR 1.0.0
- Balls/bins with equal amounts of data no longer cause wonkiness
- Zero overlap situations should work correctly with
igraph
- Added eccentricity lens/filter fuction
mappeR 0.1.5
- 1D tests will not fail due to a one interval cover
mappeR 0.1.4
- Reduced edge widths for Cytoscape visualization.
- Rescaled tightness calculation down a bit.
mappeR 0.1.3
- Edge overlap data is now present in output mapper objects.
- Cytoscape edges are styled by width instead of transparency.
mappeR 0.1.2
- The algorithm now still runs even if there is only one level set to
be considered.
mappeR 0.1.1
mappeR 0.1.0