pcmabc: Approximate Bayesian Computations for Phylogenetic Comparative Methods

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version.

Version:	1.1.3
Depends:	R (≥ 2.9.1)
Imports:	ape (≥ 3.0.6), graphics, methods, mvSLOUCH, phangorn, stats, utils, yuima
Suggests:	geiger, distory
Published:	2022-05-09
DOI:	10.32614/CRAN.package.pcmabc
Author:	Krzysztof Bartoszek, Pietro Lio'
Maintainer:	Krzysztof Bartoszek <krzbar at protonmail.ch>
License:	GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE]
NeedsCompilation:	no
Citation:	pcmabc citation info
CRAN checks:	pcmabc results

Documentation:

Reference manual:

pcmabc.pdf

Downloads:

Package source:	pcmabc_1.1.3.tar.gz
Windows binaries:	r-devel: pcmabc_1.1.3.zip, r-release: pcmabc_1.1.3.zip, r-oldrel: pcmabc_1.1.3.zip
macOS binaries:	r-release (arm64): pcmabc_1.1.3.tgz, r-oldrel (arm64): pcmabc_1.1.3.tgz, r-release (x86_64): pcmabc_1.1.3.tgz, r-oldrel (x86_64): pcmabc_1.1.3.tgz
Old sources:	pcmabc archive

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