protr: Generating Various Numerical Representation Schemes for Protein Sequences
Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.
| Version: | 1.7-4 |
| Depends: | R (≥ 3.0.2) |
| Suggests: | knitr, rmarkdown, Biostrings, GOSemSim, foreach, doParallel, org.Hs.eg.db |
| Published: | 2024-09-11 |
| DOI: | 10.32614/CRAN.package.protr |
| Author: | Nan Xiao  [aut,
cre],
Qing-Song Xu [aut],
Dong-Sheng Cao [aut],
Sebastian Mueller [ctb] (Alva Genomics) |
| Maintainer: | Nan Xiao <me at nanx.me> |
| BugReports: | https://github.com/nanxstats/protr/issues |
| License: | BSD_3_clause + file LICENSE |
| URL: | https://nanx.me/protr/, https://github.com/nanxstats/protr, http://protr.org |
| NeedsCompilation: | no |
| SystemRequirements: | ncbi-blast+ (see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>) |
| Citation: | protr citation info |
| Materials: | README NEWS |
| CRAN checks: | protr results |
Documentation:
| Reference manual: | protr.pdf |
| Vignettes: |
protr: R package for generating various numerical representation schemes of protein sequences (source, R code) |
Downloads:
| Package source: | protr_1.7-4.tar.gz |
| Windows binaries: | r-devel: protr_1.7-4.zip, r-release: protr_1.7-4.zip, r-oldrel: protr_1.7-4.zip |
| macOS binaries: | r-release (arm64): protr_1.7-4.tgz, r-oldrel (arm64): protr_1.7-4.tgz, r-release (x86_64): protr_1.7-4.tgz, r-oldrel (x86_64): protr_1.7-4.tgz |
| Old sources: | protr archive |
Reverse dependencies:
| Reverse imports: | HPiP, PredCRG, surfaltr |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=protr to link to this page.