statgenIBD: Calculation of IBD Probabilities

For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Version: 1.0.8
Depends: R (≥ 3.6)
Imports: data.table, ggplot2, Matrix, rlang, Rcpp, statgenGWAS (≥ 1.0.9), stringi
LinkingTo: Rcpp, RcppArmadillo
Suggests: rmarkdown, knitr, tinytest, R.utils
Published: 2025-02-05
DOI: 10.32614/CRAN.package.statgenIBD
Author: Martin Boer ORCID iD [aut], Bart-Jan van Rossum ORCID iD [aut, cre], Wenhao Li ORCID iD [ctb], Johannes Kruisselbrink ORCID iD [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenIBD/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://biometris.github.io/statgenIBD/index.html, https://github.com/Biometris/statgenIBD/
NeedsCompilation: yes
Materials: README NEWS
In views: Agriculture
CRAN checks: statgenIBD results

Documentation:

Reference manual: statgenIBD.pdf
Vignettes: IBD calculations using statgenIBD (source, R code)
IBD probabilities file format (source, R code)

Downloads:

Package source: statgenIBD_1.0.8.tar.gz
Windows binaries: r-devel: statgenIBD_1.0.8.zip, r-release: statgenIBD_1.0.8.zip, r-oldrel: statgenIBD_1.0.8.zip
macOS binaries: r-devel (arm64): statgenIBD_1.0.8.tgz, r-release (arm64): statgenIBD_1.0.8.tgz, r-oldrel (arm64): statgenIBD_1.0.8.tgz, r-devel (x86_64): statgenIBD_1.0.8.tgz, r-release (x86_64): statgenIBD_1.0.8.tgz, r-oldrel (x86_64): statgenIBD_1.0.8.tgz
Old sources: statgenIBD archive

Reverse dependencies:

Reverse imports: statgenMPP

Linking:

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