--- title: "4. Circular statistics" author: "Tobias Stephan" date: "`r Sys.Date()`" output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{4. Circular statistics} %\VignetteEncoding{UTF-8} %\VignetteEngine{knitr::rmarkdown} editor_options: markdown: wrap: 72 --- ```{r, include = FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ``` This vignette teaches you how to retrieve the mean direction of stress datasets. ```{r setup, echo=TRUE, message=FALSE} library(tectonicr) library(ggplot2) # load ggplot library ``` ## Mean direction Directional data is $\pi$-periodical. Thus, for the calculation of mean, the average of 35 and 355$^{\circ}$ should be 15 instead of 195$^{\circ}$. **tectonicr** provides the circular mean (`circular_mean()`) and the quasi-median (`circular_median()`) as metrics to describe average direction: ```{r mean, echo=TRUE} data("san_andreas") circular_mean(san_andreas$azi) circular_median(san_andreas$azi) ``` ## Quality weighted mean direction Because the stress data is heteroscedastic, the data with less precise direction should have less impact on the final mean direction The weighted mean or quasi-median uses the reported measurements weighted by the inverse of the uncertainties: ```{r weighted, echo=TRUE} circular_mean(san_andreas$azi, 1 / san_andreas$unc) circular_median(san_andreas$azi, 1 / san_andreas$unc) ``` The spread of directional data can be expressed by the standard deviation (for the mean) or the quasi-interquartile range (for the median): ```{r weighted_spread, echo=TRUE} circular_sd(san_andreas$azi, 1 / san_andreas$unc) # standard deviation circular_IQR(san_andreas$azi, 1 / san_andreas$unc) # interquartile range ``` ## Statistics in the Pole of Rotation (PoR) reference frame **NOTE:** Because the $\sigma_{SHmax}$ orientations are subjected to angular distortions in the geographical coordinate system, it is recommended to express statistical parameters using the transformed orientations of the PoR reference frame. ```{r por, echo=TRUE} data("cpm_models") por <- subset(cpm_models, model == "NNR-MORVEL56") |> equivalent_rotation("na", "pa") san_andreas.por <- PoR_shmax(san_andreas, por, type = "right") ``` ```{r por_stats, echo=TRUE} circular_mean(san_andreas.por$azi.PoR, 1 / san_andreas$unc) circular_sd(san_andreas.por$azi.PoR, 1 / san_andreas$unc) circular_median(san_andreas.por$azi.PoR, 1 / san_andreas$unc) circular_IQR(san_andreas.por$azi.PoR, 1 / san_andreas$unc) ``` The collected summary statistics can be quickly obtained by `circular_summary()`: ```{r summary_stats, echo=TRUE} circular_summary(san_andreas.por$azi.PoR, 1 / san_andreas$unc) ``` The summary statistics include also the circular variance, skewness, kurtosis, and the 95% confidence angle. ## Rose diagram **tectonicr** provides a rose diagram, i.e. histogram for angular data. ```{r rose1, echo=TRUE} rose(san_andreas$azi, weights = 1 / san_andreas$unc, main = "North pole", dots = TRUE, stack = TRUE, dot_cex = 0.5, dot_pch = 21 ) # add the density curve plot_density(san_andreas$azi, kappa = 10, col = "dodgerblue", shrink = 1.5) ``` The diagram shows the uncertainty-weighted frequencies (equal area rose fans), the von Mises density distribution (blue curve), and the circular mean (red line) incl. its 95% confidence interval (transparent red). Showing the distribution of the transformed data gives the better representation of the angle distribution as there is no angle distortion due to the arbitrarily chosen geographic coordinate system. ```{r rose2, echo=TRUE} rose(san_andreas.por$azi, weights = 1 / san_andreas$unc, main = "PoR", dots = TRUE, stack = TRUE, dot_cex = 0.5, dot_pch = 21 ) plot_density(san_andreas.por$azi, kappa = 10, col = "dodgerblue", shrink = 1.5) # show the predicted direction rose_line(135, radius = 1.1, col = "#009E73") ``` The green line shows the predicted direction. ## Statistical tests ### Test for random distribution Uniformly distributed orientation can be described by the *von Mises distribution* (Mardia and Jupp, 1999). If the directions are distributed randomly can be tested with the **Rayleigh Test**: ```{r random, echo=TRUE} rayleigh_test(san_andreas.por$azi.PoR) ``` Here, the test rejects the Null Hypothesis (`statistic > p.value`). Thus the $\sigma_{SHmax}$ directions have a preferred orientation. Alternative statistical tests for circular uniformity are `kuiper_test()` and `watson_test()`. Read `help()` for more details... ## Test for goodness-of-fit Assuming a von Mises Distribution (circular normal distribution) of the orientation data, a $(1-\alpha \%)/100$ **confidence interval** can be calculated (Mardia and Jupp, 1999): ```{r confidence, echo=TRUE} confidence_interval(san_andreas.por$azi.PoR, conf.level = 0.95, w = 1 / san_andreas$unc) ``` The prediction for the $\sigma_{SHmax}$ orientation is $135^{\circ}$. Since the prediction lies within the confidence interval, it can be concluded with 95% confidence that the orientations follow the predicted trend of $\sigma_{SHmax}$. The (weighted) **circular dispersion** of the orientation angles around the prediction is another way of assessing the significance of a normal distribution around a specified direction. It can be measured by: ```{r dispersion, echo=TRUE} circular_dispersion(san_andreas.por$azi.PoR, y = 135, w = 1 / san_andreas$unc) ``` The value of the dispersion ranges between 0 and 2. The standard error and the confidence interval of the calculated circular dispersion can be estimated by bootstrapping via: ```{r dispersion_MLE, echo=TRUE} circular_dispersion_boot(san_andreas.por$azi.PoR, y = 135, w = 1 / san_andreas$unc, R = 1000) ``` The statistical test for the goodness-of-fit is the (weighted) **Rayleigh Test** with a specified mean direction (here the predicted direction of $135^{\circ}$: ```{r rayleigh2, echo=TRUE} weighted_rayleigh(san_andreas.por$azi.PoR, mu = 135, w = 1 / san_andreas$unc) ``` Here, the Null Hypothesis is rejected, and thus, the alternative, that is a uniform distribution around the predicted direction, cannot be excluded. # References Mardia, K. V., and Jupp, P. E. (Eds.). (1999). "Directional Statistics" Hoboken, NJ, USA: John Wiley & Sons, Inc. doi: 10.1002/9780470316979. Ziegler, Moritz O., and Oliver Heidbach. 2017. “Manual of the Matlab Script Stress2Grid” GFZ German Research Centre for Geosciences; World Stress Map Technical Report 17-02. doi: [10.5880/wsm.2017.002](https://doi.org/10.5880/wsm.2017.002).