Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
| Version: | 1.1.0 |
| Depends: | R (≥ 4.0), ggplot2 (≥ 3.4.0) |
| Imports: | alakazam (≥ 1.3.0), dplyr (≥ 1.0.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 1.1.0), utils |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2023-10-10 |
| DOI: | 10.32614/CRAN.package.tigger |
| Author: | Daniel Gadala-Maria [aut], Susanna Marquez [aut, cre], Moriah Cohen [aut], Jason Vander Heiden [aut], Gur Yaari [aut], Steven Kleinstein [aut, cph] |
| Maintainer: | Susanna Marquez <susanna.marquez at yale.edu> |
| BugReports: | https://bitbucket.org/kleinstein/tigger/issues |
| License: | AGPL-3 |
| URL: | http://tigger.readthedocs.io |
| NeedsCompilation: | no |
| Citation: | tigger citation info |
| Materials: | README NEWS |
| CRAN checks: | tigger results |
| Reference manual: | tigger.pdf |
| Vignettes: |
Polymorphism detection and genotyping |
| Package source: | tigger_1.1.0.tar.gz |
| Windows binaries: | r-devel: tigger_1.1.0.zip, r-release: tigger_1.1.0.zip, r-oldrel: tigger_1.1.0.zip |
| macOS binaries: | r-devel (arm64): tigger_1.1.0.tgz, r-release (arm64): tigger_1.1.0.tgz, r-oldrel (arm64): tigger_1.1.0.tgz, r-devel (x86_64): tigger_1.1.0.tgz, r-release (x86_64): tigger_1.1.0.tgz, r-oldrel (x86_64): tigger_1.1.0.tgz |
| Old sources: | tigger archive |
| Reverse imports: | ogrdbstats |
Please use the canonical form https://CRAN.R-project.org/package=tigger to link to this page.