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Vector |
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Atom object. The Atom object stores atom name (both with and without spaces), coordinates, B factor, occupancy, alternative location specifier and (optionally) anisotropic B factor and standard deviations of B factor and positions.
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Calculate distance between two atoms. Example:
>>> distance=atom1-atom2
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Set standard deviation of atomic parameters. The standard deviation of atomic parameters consists of 3 positional, 1 B factor and 1 occupancy standard deviation.
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Set standard deviations of anisotropic temperature factors.
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Set anisotropic B factor.
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Set the disordered flag to 1. The disordered flag indicates whether the atom is disordered or not. |
Set the parent residue. Arguments: o parent - Residue object |
Return the full id of the atom. The full id of an atom is the tuple (structure id, model id, chain id, residue id, atom name, altloc). |
Apply rotation and translation to the atomic coordinates. Example: >>> rotation=rotmat(pi, Vector(1,0,0)) >>> translation=array((0,0,1), 'f') >>> atom.transform(rotation, translation)
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Return coordinates as Vector.
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