Class ChromosomeSimpleName


  • public class ChromosomeSimpleName
    extends java.lang.Object
    Convert chromosome names to simple names
    Author:
    pcingola
    • Field Summary

      Fields 
      Modifier and Type Field Description
      static java.lang.String[] CHROMO_PREFIX  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static java.lang.String get​(java.lang.String chrName)
      Get a simple name for the chromosome
      protected java.lang.String simpleName​(java.lang.String chr)
      Simplify chromosome name
      protected java.lang.String simpleNameCache​(java.lang.String chrName)
      Query cache before simplifying name
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Field Detail

      • CHROMO_PREFIX

        public static final java.lang.String[] CHROMO_PREFIX
    • Method Detail

      • get

        public static java.lang.String get​(java.lang.String chrName)
        Get a simple name for the chromosome
      • simpleName

        protected java.lang.String simpleName​(java.lang.String chr)
        Simplify chromosome name
      • simpleNameCache

        protected java.lang.String simpleNameCache​(java.lang.String chrName)
        Query cache before simplifying name