Uses of Class
org.snpeff.geneSets.algorithm.EnrichmentAlgorithm
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Packages that use EnrichmentAlgorithm Package Description org.snpeff.geneSets.algorithm -
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Uses of EnrichmentAlgorithm in org.snpeff.geneSets.algorithm
Subclasses of EnrichmentAlgorithm in org.snpeff.geneSets.algorithm Modifier and Type Class Description class
EnrichmentAlgorithmGreedy
A generic greedy enrichment algorithm for selecting gene-setsclass
EnrichmentAlgorithmGreedyVariableSize
A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.class
FisherPValueAlgorithm
class
FisherPValueGreedyAlgorithm
class
LeadingEdgeFractionAlgorithm
Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"class
NoneAlgorithm
An algorithm that does nothingclass
RankSumPValueAlgorithm
class
RankSumPValueGreedyAlgorithm
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