Package org.snpeff.motif
Class Jaspar
- java.lang.Object
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- org.snpeff.motif.Jaspar
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Constructor Summary
Constructors Constructor Description Jaspar()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Pwm
getPwm(java.lang.String pwmId)
java.util.Iterator<Pwm>
iterator()
void
load(java.lang.String jasparMatrixFile)
Load matrix filevoid
setVerbose(boolean verbose)
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Method Detail
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getPwm
public Pwm getPwm(java.lang.String pwmId)
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iterator
public java.util.Iterator<Pwm> iterator()
- Specified by:
iterator
in interfacejava.lang.Iterable<Pwm>
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load
public void load(java.lang.String jasparMatrixFile)
Load matrix file- Parameters:
jasparMatrixFile
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setVerbose
public void setVerbose(boolean verbose)
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