Package org.snpeff.fastq
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Class Summary Class Description FastqSplit Split a fastq into N filesFastqTools Simple maipulation of fastq sequencesFastqTrimmer Trim fastq sequence when quality drops below a threshold The resulting sequence has to ba at least 'minBases'FastqTrimmerAdrian Trim fastq sequence when: - Median quality drops below a threshold (mean is calculated every 2 bases instead of every base) - Sequence length is at least 'minBases' From Adrian Platts ...Also the sliding window was not every base.FastqTrimmerMedian Trim fastq sequence when median quality drops below a threshold