Package org.snpeff.pdb
Class IdMapper
- java.lang.Object
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- org.snpeff.pdb.IdMapper
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public class IdMapper extends java.lang.Object
Map IDs- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description IdMapper()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
add(IdMapperEntry ime)
void
addAll(java.util.Collection<IdMapperEntry> imes)
java.util.List<IdMapperEntry>
getByPdbId(java.lang.String id)
java.util.List<IdMapperEntry>
getByPdbId(java.lang.String id, java.lang.String chainId)
java.util.List<IdMapperEntry>
getByTrId(java.lang.String id)
java.util.Collection<IdMapperEntry>
getEntries()
void
load(java.lang.String fileName)
void
setVerbose(boolean verbose)
java.lang.String
toString()
static java.lang.String
transcriptIdNoVersion(java.lang.String trId)
Remove version form transcript IDstatic java.util.Set<java.lang.String>
transcriptIds(java.util.List<IdMapperEntry> ids)
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Method Detail
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transcriptIdNoVersion
public static java.lang.String transcriptIdNoVersion(java.lang.String trId)
Remove version form transcript ID
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transcriptIds
public static java.util.Set<java.lang.String> transcriptIds(java.util.List<IdMapperEntry> ids)
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add
public void add(IdMapperEntry ime)
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addAll
public void addAll(java.util.Collection<IdMapperEntry> imes)
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getByPdbId
public java.util.List<IdMapperEntry> getByPdbId(java.lang.String id)
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getByPdbId
public java.util.List<IdMapperEntry> getByPdbId(java.lang.String id, java.lang.String chainId)
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getByTrId
public java.util.List<IdMapperEntry> getByTrId(java.lang.String id)
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getEntries
public java.util.Collection<IdMapperEntry> getEntries()
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load
public void load(java.lang.String fileName)
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setVerbose
public void setVerbose(boolean verbose)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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