Package org.snpeff.coverage
Class CoverageChr
- java.lang.Object
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- org.snpeff.coverage.CoverageChr
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- All Implemented Interfaces:
java.io.Serializable
public class CoverageChr extends java.lang.Object implements java.io.Serializable
Base by base coverage (one chromsome)- Author:
- pcingola
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description CoverageChr(int len)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description double
avgCoverage(int start, int end)
Calculate Coverage per baselong
coverage(int start, int end)
Calculate Coverage per baseshort[]
getCount()
void
inc(int start, int end)
Increment a regionjava.lang.String
toString()
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Method Detail
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avgCoverage
public double avgCoverage(int start, int end)
Calculate Coverage per base- Returns:
- Average coverage per base
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coverage
public long coverage(int start, int end)
Calculate Coverage per base- Returns:
- Average coverage per base
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getCount
public short[] getCount()
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inc
public void inc(int start, int end)
Increment a region- Parameters:
start
-end
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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