Package org.snpeff.gsa
Class PvaluesList
- java.lang.Object
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- org.snpeff.gsa.ScoreList
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- org.snpeff.gsa.PvaluesList
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public class PvaluesList extends ScoreList
A list of pvalues (i.e. values in the range [0, 1])- Author:
- pcingola
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Nested Class Summary
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Nested classes/interfaces inherited from class org.snpeff.gsa.ScoreList
ScoreList.ScoreSummary
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Field Summary
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Fields inherited from class org.snpeff.gsa.ScoreList
SIGNIFICANCE_LEVEL_95
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Constructor Summary
Constructors Constructor Description PvaluesList()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
add(double score)
Add a p-value to the listprotected double
getDefaultValue()
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Methods inherited from class org.snpeff.gsa.ScoreList
avg, avgLargestTop, avgSmallestTop, cdf, cdfUpper, chiSquareCDFComplementary, getGeneId, getScore, max, min, pValueBonferroni, pValueFdr, pValueFisherChi2, pValueSimes, pValueZScore, quantile, score, setGeneId, size, sum, toString
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Method Detail
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add
public void add(double score)
Add a p-value to the list
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getDefaultValue
protected double getDefaultValue()
- Overrides:
getDefaultValue
in classScoreList
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