Class MotifLogo


  • public class MotifLogo
    extends java.lang.Object
    Create a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"
    Author:
    pcingola
    • Constructor Summary

      Constructors 
      Constructor Description
      MotifLogo​(Pwm pwm)  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static double log2​(double p)
      Log base 2
      java.lang.String toStringHtml​(int width, int maxHeight, EffectType efectType)
      Return an HTML string that represents the motif.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • MotifLogo

        public MotifLogo​(Pwm pwm)
    • Method Detail

      • log2

        public static double log2​(double p)
        Log base 2
      • toStringHtml

        public java.lang.String toStringHtml​(int width,
                                             int maxHeight,
                                             EffectType efectType)
        Return an HTML string that represents the motif.