Uses of Class
org.snpeff.binseq.DnaAndQualitySequence
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Packages that use DnaAndQualitySequence Package Description org.snpeff.binseq org.snpeff.binseq.comparator -
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Uses of DnaAndQualitySequence in org.snpeff.binseq
Subclasses of DnaAndQualitySequence in org.snpeff.binseq Modifier and Type Class Description class
DnaAndQualitySequenceWithId
DnaAndQualitySequence with an IDMethods in org.snpeff.binseq that return DnaAndQualitySequence Modifier and Type Method Description static DnaAndQualitySequence
DnaAndQualitySequence. empty()
DnaAndQualitySequence
DnaAndQualitySequence. overlap(BinarySequence sequence, int start)
Creates a new sequence by overlapping 'this' and 'sequence' E.g.DnaAndQualitySequence
DnaAndQualitySequence. read(java.io.DataInputStream dataInStream)
Read data in binary formatDnaAndQualitySequence
DnaAndQualitySequence. reverseWc()
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Uses of DnaAndQualitySequence in org.snpeff.binseq.comparator
Methods in org.snpeff.binseq.comparator with parameters of type DnaAndQualitySequence Modifier and Type Method Description int
DnaQualSubsequenceComparator. compare(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2)
int
DnaQualSubsequenceComparator. score(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2)
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