Class VariantTxtFileIterator

  • All Implemented Interfaces:
    java.lang.Iterable<Variant>, java.util.Iterator<Variant>

    public class VariantTxtFileIterator
    extends VariantFileIterator
    Opens a sequence change file and iterates over all sequence changes TXT Format: Tab-separated format, containing five columns that correspond to: chr \t position \t refSeq \t newSeq \t strand \t quality \t coverage \t id \n Fields strand, quality, coverage and id are optional E.g. 5 140532 T C + 31 12 1017956 T A + 2 946507 G C + 21 16 Very_important_Snp 14 19584687 C T - 19 66520 G A + 27 8 150029 A T + 31
    Author:
    pcingola
    • Constructor Detail

      • VariantTxtFileIterator

        public VariantTxtFileIterator​(java.lang.String fileName)
      • VariantTxtFileIterator

        public VariantTxtFileIterator​(java.lang.String fileName,
                                      Genome genome)