Class FastqTrimmerMedian

  • Direct Known Subclasses:
    FastqTrimmerAdrian

    public class FastqTrimmerMedian
    extends FastqTrimmer
    Trim fastq sequence when median quality drops below a threshold
    Author:
    pcingola
    • Constructor Summary

      Constructors 
      Constructor Description
      FastqTrimmerMedian​(int qualityThreshold, int minBases, int runningMedianLength)  
    • Method Summary

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FastqTrimmerMedian

        public FastqTrimmerMedian​(int qualityThreshold,
                                  int minBases,
                                  int runningMedianLength)