vg
tools for working with variation graphs
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This is the complete list of members for vg::GaplessExtender, including all inherited members.
aligner | vg::GaplessExtender | |
cluster_type typedef | vg::GaplessExtender | |
extend(cluster_type &cluster, const std::string &sequence, size_t max_mismatches=MAX_MISMATCHES, bool trim_extensions=true) const | vg::GaplessExtender | |
GaplessExtender() | vg::GaplessExtender | |
GaplessExtender(const gbwtgraph::GBWTGraph &graph, const Aligner &aligner) | vg::GaplessExtender | explicit |
get_handle(seed_type seed) | vg::GaplessExtender | inlinestatic |
get_node_offset(seed_type seed) | vg::GaplessExtender | inlinestatic |
get_pos(seed_type seed) | vg::GaplessExtender | inlinestatic |
get_read_offset(seed_type seed) | vg::GaplessExtender | inlinestatic |
graph | vg::GaplessExtender | |
MAX_MISMATCHES | vg::GaplessExtender | static |
seed_type typedef | vg::GaplessExtender | |
to_seed(pos_t pos, size_t read_offset) | vg::GaplessExtender | inlinestatic |
trim(std::vector< GaplessExtension > &extensions, size_t max_mismatches=MAX_MISMATCHES, const gbwt::CachedGBWT *cache=nullptr) const | vg::GaplessExtender |