vg
tools for working with variation graphs
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Namespaces | |
vg | |
Functions | |
handle_t | vg::gbwt_to_handle (const HandleGraph &graph, gbwt::node_type node) |
Convert gbwt::node_type to handle_t. More... | |
pos_t | vg::gbwt_to_pos (gbwt::node_type node, size_t offset) |
Convert gbwt::node_type and an offset as size_t to pos_t. More... | |
gbwt::node_type | vg::handle_to_gbwt (const HandleGraph &graph, handle_t handle) |
Convert handle_t to gbwt::node_type. More... | |
gbwt::node_type | vg::pos_to_gbwt (pos_t pos) |
Extract gbwt::node_type from pos_t. More... | |
gbwt::node_type | vg::mapping_to_gbwt (const Mapping &mapping) |
Convert Mapping to gbwt::node_type. More... | |
gbwt::node_type | vg::xg_path_to_gbwt (const xg::XGPath &path, size_t i) |
Convert a node on XGPath to gbwt::node_type. More... | |
std::string | vg::thread_name (const gbwt::GBWT &gbwt_index, size_t i) |
Get a string representation of a thread name stored in GBWT metadata. More... | |
gbwt::GBWT | vg::get_gbwt (const std::vector< gbwt::vector_type > &paths) |
Transform the paths into a GBWT index. Primarily for testing. More... | |
Utility classes and functions for working with GBWT.