vg
tools for working with variation graphs
vg::AlignerClient Member List

This is the complete list of members for vg::AlignerClient, including all inherited members.

adjust_alignments_for_base_qualityvg::AlignerClient
AlignerClient(double gc_content_estimate=vg::default_gc_content)vg::AlignerClientprotected
gc_content_estimatevg::AlignerClientprivate
get_aligner(bool have_qualities=true) constvg::AlignerClientprotected
get_qual_adj_aligner() constvg::AlignerClientprotected
get_regular_aligner() constvg::AlignerClientprotected
load_scoring_matrix(std::ifstream &matrix_stream)vg::AlignerClient
qual_adj_alignervg::AlignerClientprivate
regular_alignervg::AlignerClientprivate
set_alignment_scores(int8_t match, int8_t mismatch, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus, uint32_t xdrop_max_gap_length=default_xdrop_max_gap_length)vg::AlignerClient