vg
tools for working with variation graphs
vg
HaplotypeIndexer
vg::HaplotypeIndexer Member List
This is the complete list of members for
vg::HaplotypeIndexer
, including all inherited members.
batch_file_prefix
vg::HaplotypeIndexer
build_gbwt
(const std::vector< std::string > &vcf_parse_files, const std::string &job_name="GBWT") const
vg::HaplotypeIndexer
build_gbwt
(const PathHandleGraph &graph) const
vg::HaplotypeIndexer
build_gbwt
(const PathHandleGraph &graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format) const
vg::HaplotypeIndexer
create_progress
(const string &message, long count)
vg::Progressive
create_progress
(long count)
vg::Progressive
destroy_progress
(void)
vg::Progressive
discard_overlaps
vg::HaplotypeIndexer
excluded_samples
vg::HaplotypeIndexer
force_phasing
vg::HaplotypeIndexer
gbwt_buffer_size
vg::HaplotypeIndexer
HaplotypeIndexer
()
vg::HaplotypeIndexer
id_interval
vg::HaplotypeIndexer
increment_progress
()
vg::Progressive
last_progress
vg::Progressive
private
max_missing_variant_warnings
vg::HaplotypeIndexer
parse_vcf
(const std::string &filename, const PathHandleGraph &graph, const std::string &job_name="GBWT") const
vg::HaplotypeIndexer
parse_vcf
(const std::string &filename, const PathHandleGraph &graph, const std::vector< path_handle_t > &paths, const std::string &job_name="GBWT") const
vg::HaplotypeIndexer
path_to_vcf
vg::HaplotypeIndexer
paths_as_samples
vg::HaplotypeIndexer
phase_homozygous
vg::HaplotypeIndexer
preload_progress
(const string &message)
vg::Progressive
progress
vg::Progressive
private
progress_count
vg::Progressive
private
progress_message
vg::Progressive
private
progress_seen
vg::Progressive
private
regions
vg::HaplotypeIndexer
rename_variants
vg::HaplotypeIndexer
sample_range
vg::HaplotypeIndexer
samples_in_batch
vg::HaplotypeIndexer
show_progress
vg::Progressive
update_progress
(long i)
vg::Progressive
warn_on_missing_variants
vg::HaplotypeIndexer
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